Okay, face it. Programmers can get lazy, cut corners, or make mistakes. They also can do quick prototypes, and then forget to rewrite them later. Well, while I can't list mistakes in here, I can list prototype-like segments of code that should be aggressively refactored. This does not list optimization issues, that needs to be done after intense profiling.
docs/examples/demo.php - ad hoc HTML/PHP soup to the extreme
AttrDef
Class - doesn't support Unicode characters (fringe); uses regular
expressions
Lang - code duplication; premature optimization
Length - easily mistaken for CSSLength
URI - multiple regular expressions; missing validation for parts (?)
CSS - parser doesn't accept advanced CSS (fringe)
Number - constructor interface inconsistent with Integer
ConfigSchema - redefinition is a mess
Strategy
FixNesting - cannot bubble nodes out of structures, duplicated checks
for special-case parent node
MakeWellFormed - insufficient automatic closing definitions (check HTML
spec for optional end tags, also, closing based on type (block/inline)
might be efficient).
RemoveForeignElements - should be run in parallel with MakeWellFormed
URIScheme - needs to have callable generic checks
mailto - doesn't validate emails, doesn't validate querystring
news - doesn't validate opaque path
nntp - doesn't constrain path